MacSGP analysis¶
- Simulation study
- Visium adult mouse brain datasets containing two biological replicates
- Cell type deconvolution using MacSGP
- Applying MacSGP to detect cell-type-specific SGPs
- Mouse brain dataset analysis
- Cross sample robustness analysis on the mouse brain datasets
- Analysis of L2-regularization on the mouse brain dataset
- Robustness analysis with resampling in the mouse brain dataset
- Spatial permutation test on the mouse brain dataset
- Mouse brain (Visium): per-cell-type K selection (reproduce)
- Results of k=10 on the mouse brain dataset
- Visium kidney cancer dataset at the tumour-normal interface
- Cell type deconvolution using MacSGP
- Applying MacSGP to detect cell-type-specific SGPs
- Kidney cancer dataset analysis
- Kidney cancer: per-cell-type K selection (reproduce)
- Results of k=10 on the kidney cancer dataset
- Robustness analysis with random initilization
- Sensitivity Analysis — Factor & Loading Coherence
- Comparison with other baselines on the kidney cancer dataset
- Multiple human colorectal cancer datasets generated by different technologies
- Applying MacSGP to the 10x Visium CRC dataset
- Applying MacSGP to the 10x Xenium CRC dataset
- Cross platform robustness analysis on shared Xenium gene panel
- Results of k=10 on the 10x Visium HD CRC dataset
- Analysis of goblet cells in the CRC datasets
- Robustness analysis with bootstrap in the 10x Visium HD CRC dataset
- Benchmark on the subampled 10x Visium HD CRC dataset
- CRC (Visium HD 16 µm): per-cell-type K selection (reproduce)